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Publikace

Diplomové práce   Disertační práce 

2017

Sofer, Z., Luxa, J., Bouša, D., Sedmidubský, D., Lazar, P., Hartman, T., Hardtdegen, H. and Pumera, M. , The Covalent Functionalization of Layered Black Phosphorus by Nucleophilic Reagents. Angew. Chem. Int. Ed. 2017, 56, 9891–9896. DOI:10.1002/anie.201705722

März M., Kohout M., Chudoba J., Cibulka R.: Photocatalytic Esterification under Mitsunobu Reaction Conditions Mediated by Flavin and Visible Light Org. Biomol. Chem. 2017, 15, 1970-1975.  DOI:10.1039/C6OB02770A

Kolderová, N.; Neveselý, T.; Šturala, J.; Kuchař, M.; Holakovský, R.; Kohout, M.: Enantioseparation of Chiral Sulfoxides on Amylose-Based Columns: Comparison of Normal Phase Liquid Chromatography and Supercritical Fluid Chromatography. Chromatographia 2017, 80, 547-557. DOI: 10.1007/s10337-016-3234-6

Špačková J., Svobodová E., Hartman T., Stibor I., Kopecká J., Cibulková J., Chudoba J., Cibulka R.: Visible Light [2+2] Photocycloaddition Mediated by Flavin Derivative Immobilized on Mesoporous Silica, ChemCatChem 2017, 9, 1177-1181. DOI:10.1002/cctc.201601654

Jirásek M., Straková K., Neveselý T., Svobodová E., Rottnerová Z., Cibulka R.: Flavin-Mediated Visible Light [2+2] Photocycloadditon of Nitrogen and Sulfur-Containing Dienes, Eur. J. Org. Chem. 2017, 2139-2146. DOI:10.1002/ejoc.201601377

2016

Hartman T., Cibulka R.: Photocatalytic Systems with Flavinium Salts: From Photolyase Models to Synthetic Tool for Cyclobutane Ring Opening, Org. Lett. 2016, 18, 3710-3713. DOI:10.1021/acs.orglett.6b01743

Bím, D.; Svobodová, E.; Eigner, V.; Rulíšek, L.; Hodačová, J.: Copper(II) and Zinc(II) Complexes of Conformationally Constrained Polyazamacrocycles as Efficient Catalysts for RNA Model Substrate Cleavage in Aqueous Solution at Physiological pH, Chem. Eur. J. 2016, 22, 10426-10437.  DOI:10.1002/chem.201683062

Neveselý T., Svobodová E., Chudoba J., Sikorski M., Cibulka R.: Efficient metal-free aerobic photooxidation of sulfides to sulfoxides mediated by a vitamin B2 derivative and visible light, Adv. Synth. Catal. 2016, 358, 1654–1663. DOI:10.1002/adsc.201501123 VIP.

Holakovský R., Cibulka R., Konečková E., März M.: Močovina na bázi binaftalenu pro stanovení enantiomerní čistoty chirálních sulfoxidů pomocí 1H-NMR analýzy. Patent č. 305 940 (PV: 00710-14)

2015

García, Y. R.; Zelenka, J.; Pabon, Y. V.; Iyer, A.; Buděšínský, M.; Kraus, T.; Smith, C. I. E.; Madder, A.: Cyclodextrin–peptide conjugates for sequence specific DNA binding, Org. Biomol. Chem. 2015, 13, 5273–5278. DOI:10.1039/C5OB00609K

Bousa, D.; Jankovsky, O.; Sedmidubsky, D.; Luxa, J.; Sturala, J.; Pumera, M.; Sofer, Z.: Mesomeric Effects of Graphene Modified with Diazonium Salts: Substituent Type and Position Influence its Properties, Chem. Eur. J. 2015, 21, 17728-17738. DOI:10.1002/chem.201502127

Tomanová P., Šturala J., Buděšínský M., Cibulka R.: A click chemistry approach towards flavin-cyclodextrin conjugates – bioinspired sulfoxidation catalysts, Molecules 2015, 20, 19837-19848. DOI:10.3390/molecules201119667

Holakovský R., März M., Cibulka R.: Urea derivatives based on a 1,1'-binaphthalene skeleton as chiral solvating agents for sulfoxides, Tetrahedron: Asymmetry 2015, 26, 1328-1334. DOI:10.1016/j.tetasy.2015.10.011

Hartman J., Šturala J., Cibulka R.: Two-phase Oxidations with Aqueous Hydrogen Peroxide Catalysed by Amphiphilic Pyridinium and Diazinium Salts, Adv. Synth. Catal. 2015, 357, 3573-3586. DOI:10.1002/adsc.201500687

Mojr V., Svobodová E., Straková K., Neveselý T., Chudoba J., Dvořáková H., Cibulka R.: Tailoring Flavins for Visible Light Photocatalysis: Organocatalytic [2+2] Cycloadditions Mediated by a Flavin Derivative and Visible Light, Chem. Comm. 201551, 12036 – 12039. DOI:10.1039/C5CC01344E

Sofer, Z.; Jankovský, O.; Šimek, P.; Sedmidubský, D.; Šturala, J.; Kosina, J.; Mikšová, R.; Macková, A.; Mikulics, M.; Pumera, M.: Insight into the Mechanism of the Thermal Reduction of Graphite Oxide: Deuterium-Labeled Graphite Oxide Is the Key, ACS Nano; 2015, 9, 5478-5485. DOI:10.1021/acsnano.5b01463

Šturala J., Boháčová S., Chudoba J., Metelková R., Cibulka R.: Electron-deficient Heteroarenium salts – an Organocatalytic Tool for Activation of Hydrogen Peroxide in Oxidations, J. Org. Chem., 2015, 80, 2676-2699. DOI:10.1021/jo502865f

Cibulka R.: Artificial flavin systems for chemoselective and stereoselective oxidations (Microreview), Eur. J. Org. Chem., 2015, 915-932. DOI:10.1002/ejoc.201403275 + Cover picture

2014

Zelenka J., Hartman T. Klímová K., Hampl F., Cibulka R.: Phase-transfer catalysis in oxidations based on the covalent bonding of hydrogen peroxide to amphiphilic flavinium salts, ChemCatChem, 2014, 6, 2843-2846. DOI:10.1002/cctc.201402533

Kotoučová H., Strnadová I., Kovandová M., Chudoba J., Dvořáková H., Cibulka R.: Biomimetic aerobic oxidative hydroxylation of arylboronic acids to phenols catalysed by a flavin derivative, Org. Biomol. Chem., 2014, 12, 2137-2142. DOI:10.1039/C3OB42081G

2013

Ménová P., Dvořáková H., Eigner V. Ludvík J., Cibulka R.: Electron-deficient alloxazinium salts: efficient organocatalysts of mild and chemoselective sulfoxidations with hydrogen peroxide, Adv. Synth. Catal., 2013, 355, 3451-3462. DOI:10.1002/adsc.201300617

Kümmel S., Cibulka R., König B.: “Flavin Photocatalysis” in Chemical Photocatalysis (Burkhard König, ed.), de Gruyter, Berlin 2013, ISBN: 978-3-11-026924-6.

Jurok R., Hodačová J., Eigner V., Dvořáková H., Setnička V., Cibulka R.: Planar chiral flavinium salts: Synthesis and evaluation of the effect of substituents on the catalytic efficiency in enantioselective sulfoxidation reactions, Eur. J. Org. Chem., 2013, 7724-7738. DOI:10.1002/ejoc.201300847

Daďová J., Kümmel S., Feldmeier C., Cibulková J., Pažout R., Maixner J., Gschwind R. M., König B., Cibulka R.: Aggregation effects in visible light flavin photocatalysts: Synthesis, structure and catalytic activity of 10-arylflavins, Chem. Eur. J., 2013, 19, 1066-1075. DOI:10.1002/chem.201202488

2012

Hartman T., Herzig V., Buděšínský M., Jindřich J., Cibulka R., Kraus T.: Flavin-cyclodextrin conjugates: effect of the structure on catalytic activity in enantioselective sulfoxidations, Tetrahedron: Asymmetry, 2012, 23, 1571-1583. DOI:10.1016/j.tetasy.2012.10.017

Šturala J., Cibulka R.: Novel synthesis of symmetrical dinitro and diamino Tröger’s base analogues, Eur. J. Org. Chem., 2012, 7066-7074. DOI:10.1002/ejoc.201201188

Cibulka R., Jurok R.: ORGANOKATALYTICKÉ ENANTIOSELEKTIVNÍ OXIDACE SULFIDŮ NA SULFOXIDY, Chemické listy, 2012, 106, 896-902. http://www.chemicke-listy.cz/docs/full/2012_10_896-902.pdf

Ménová P., Cibulka R.: INSIGHT INTO THE CATALYTIC ACTIVITY OF ALLOXAZINIUM AND ISOALLOXAZINIUM SALTS IN THE OXIDATIONS OF SULFIDES AND AMINES WITH HYDROGEN PEROXIDE, J. Mol. Catal. A: Chemical, 2012, 363-364, 362-370. DOI:10.1016/j.molcata.2012.07.012

Daďová J., Svobodová E., Sikorski M., König B., Cibulka R.: Photooxidation of sulfides to sulfoxides mediated by tetra-O-acetylriboflavin and visible light. ChemCatChem, 2012, 4, 620-623. DOI:10.1002/cctc.201100372

Tisková zpráva:"Blue Light District: Sulfide Photooxidation" (ChemistryViews.org)

2011

Mojr V., Budesinsky M., Cibulka R., Kraus T.: Alloxazine-cyclodextrin conjugates for organocatalytic enantioselective sulfoxidations. Org. Biomol. Chem., 2011, 9, 7257-7580. DOI:10.1039/C1OB05934C + Cover picture

Ménová P., Eigner V., Čejka J., Dvořáková H., Šanda M., Cibulka R.: Synthesis and structural studies of flavin and alloxazine adducts with O-nucleophiles. J. Mol. Struct. 2011, 1004, 178-187. DOI:10.1016/j.molstruc.2011.08.002

Sayin S., Akkus G. U., Cibulka R., Stibor I., Yilmaz M: Synthesis of Flavin-Calix[4]arene Conjugate Derivatives. Helv. Chim. Acta 2011, 94, 481-485. DOI:10.1002/hlca.201000260

Ménová P., Kafka F., Dvořáková H., Gunnoo S., Šanda M., Cibulka R.: Pyrazinium Salts as Efficient Organocatalysts of Mild Oxidations with Hydrogen Peroxide. Adv. Synth. Catal. 2011, 353, 865-870. DOI:10.1002/adsc.201000906

2010

Rohlíček J. Cibulka R., Cibulková J., Maixner J., Hušák M.: 10-Methylisoalloxazine-5-oxide from synchrotron powder diffraction data. Acta Cryst. 2010, E66, o3350–o3351. DOI:10.1107/S1600536810048932

Mojr V., Herzig V., Budesinsky M., Cibulka R., Kraus T.: Flavin-cyclodextrin conjugates as catalysts of enantioselective sulfoxidations with hydrogen peroxide in aqueous media. Chem. Comm., 2010, 46, 7599–7601. DOI:10.1039/C0CC02562C

Kovaříček P., Eigner V., Holakovský R.: Ribbon and Pleated Sheet Formation by Anion-Directed Hydrogen Bonding In 1,4-Bis(4,5-dihydro-1H-imidazol-2-yl)benzene Salts.Structural Chemistry Communications, 2010, Vol. 1, No. 1, 8-11. http://www.factumpress.com/index.php/scc/article/viewFile/19/pdf

Jurok R., Cibulka R., Dvořáková H., Hampl F., Hodačová J.: Planar Chiral Flavinium Salts - Prospective Catalysts for Enantioselective Sulfoxidation Reactions. Eur. J. Org. Chem. 2010, 5217-5224. DOI:10.1002/ejoc.201000592

Cibulka R.: Flaviny – perspektivní katalyzátory oxidací a redukcí. Chem. Listy 2010,104, 326-333. http://chemicke-listy.cz/docs/full/2010_05_326-333.pdf

J. Budka, V. Eigner, R. Holakovský, P. Kovarícek and T. Louzilová: 25,26,27,28-Tetrapropoxycalix[4]arene-5,17-dicarbonitrile. Acta Cryst. 2010, E66, o419-o420. http://journals.iucr.org/e/issues/2010/02/00/om2307/om2307.pdf

Jiří Žurek, Radek Cibulka, Hana Dvořáková, Jiří Svoboda: N1,N10-Ethylene-bridged flavinium salts derived from L-valinol: synthesis and catalytic activity in H2O2oxidations, Tetrahedron Lett. 2010, 51, 1083-1086. DOI:10.1016/j.tetlet.2009.12.096

2009

Ménová P., Eigner V., Cibulka R., Čejka J., Dvořáková H.: 5-Ethyl-4a-methoxy-1,3-dimethyl-4a,5-dihydrobenzo[g]pteridine-2,4(1H,3H)dione. Acta Cryst. 2009, E65, o1536–o1537. DOI:10.1107/S1600536809020856

Cibulka R., Baxová L., Dvořáková H., Hampl F., Ménová P., Mojr V., Plancq B., Sayin S.: Catalytic effect of alloxazinium and isoalloxazinium salts on oxidation of sulfides with hydrogen peroxide in micellar media. Collect. Czech. Chem. Commun. 2009, 74, 973-993. DOI:10.1135/cccc2009030

2008

Jurok R., Svobodová E., Cibulka R.,Hampl F.: Reactivity in micelles - Are we really able to design micellar catalysts? Collect. Czech. Chem. Commun. 2008, 73, 127-146. DOI:10.1135/cccc20080127

2007

Baxová L., Cibulka R., Hampl F.: Organocatalytic sulfoxidation in micellar systems containing amphiphilic flavinium salts using hydrogen peroxide as terminal oxidant. J. Mol. Catal. A. 2007, 277, 53–60. DOI:10.1016/j.molcata.2007.07.027

Cibulka R., Svobodová E., König B., Ludvík J., Hampl F., Liška F.: Studium využití některých N-donorových ligandů a jejich komplexů s ionty přechodných kovů. Chem. Listy 2007, 101, 886-894. http://chemicke-listy.cz/docs/full/2007_11_886-894.pdf

2006

Celik H., Ekmekci G., Ludvík J., Pícha J., Zuman P: Electroreduction of aromatic oximes: Diprotonation, adsorption, imine formation, and substituent effects. J. Phys. Chem. B 2006, 110, 6785-6796. DOI:10.1021/jp056808t

Kivala M., Cibulka R., Hampl F.: Cleavage of 4-nitrophenyl diphenyl phosphate by isomeric quaternary pyridinium ketoximes - How can structure and lipophilicity of functional surfactants influence their reactivity in micelles and microemulsions?Collect. Czech. Chem. Commun. 2006, 71, 1642-1658. DOI:10.1135/cccc20061642

2005

Svobodová E., Cibulka R., Hampl F., Šmidrkal J., Liška F.: Metal ion transport through bulk liquid membrane mediated by cationic ligand surfactants. Collect. Czech. Chem. Commun. 2005, 70, 441-465. DOI:10.1135/cccc20050441

Chvapil M., Kielar F., Liška F., Šilhánková A., Bregel K.: Synthesis and evaluation of long-acting d-penicillamine derivatives. Connective Tissue Research 2005, 46, 242-250. DOI:10.1080/03008200500416690

Pícha J., Kuča K., Kivala M., Kohout M., Cabal J., Liška F.: A new group of monoquaternary reactivators of acetylcholinesterase inhibited by nerve agents. J. Enzyme Inhib. Med. Chem. 2005, 20, 233-237. DOI:10.1080/14756360400021858

2004

Pícha J., Cibulka R., Hampl F., Liška F., Pařík P., Pytela O.: Reactivity of p-substituted benzaldoximes in the cleavage of p-nitrophenyl acetate: kinetic and mechanism.Collect. Czech. Chem. Commun. 2004, 69, 397-413. DOI:10.1135/cccc20040397

Pícha J., Cibulka R., Liška F., Pařík P., Pytela O.: Reparametrization and/or determination of Hammett, inductive, mesomeric and AISE substituent constants for five substituents: N+(CH3)3, CH2N+(CH3)3, CH2Py, CH2SO2CH3 and PO(OCH3)2.Collect. Czech. Chem. Commun. 2004, 69, 2239-2252. DOI:10.1135/cccc20042239

Wiest O., Harrison C. B., Saettel N. J., Cibulka R., Sax M., König B.: Design, synthesis and evaluation of a biomimetic artificial photolyase model. J. Org. Chem. 2004, 69, 8183–8185. DOI:10.1021/jo0494329

Cibulka R., Vasold R. König B.: Catalytic Photooxidation of 4-Methoxybenzyl alcohol with Flavin Zinc(II) cyclen complex. Chem. Eur. J. 2004, 10, 6223–6231. DOI:10.1002/chem.200400232

2002

Ludvik J., Cibulka R.: Electroreduction of methyl azinyl ketoximes and their Ni(II), Cu(II) and Zn(II) complexes on mercury - correlation with their hydrolytic activity. Proceedings of the Fifth International Manuel M. Baizer Symposium in Honor of Professor Jean Michel Saveant, The 201th Meeting of the Electrochemical Society2002, Vol. 10, p. 142–146.

2001

Cibulka R., Císařová I., Ondráček J., Liška F., Ludvík J.: Electrochemical Reductions of Ni2+, Cu2+ and Zn2+ Complexes of Azinyl Methyl Ketoximes on Mercury. Collect. Czech. Chem. Commun. 2001, 66, 170. DOI:10.1135/cccc20010170

Kotoučová H., Cibulka R., Hampl F., Liška F.: Amphiphilic quaternary pyridinium ketoximes as functional hydrolytic micellar catalysts – does the nucleophilic function position influence their reactivity? J. Mol. Catal., 2001, 174, 59. DOI:10.1016/S1381-1169(01)00178-9

Mlíčková K., Šebela M., Cibulka R., Frébort I., Peč P., Liška F., Tanizawa K.: Inhibition of copper amine oxidases by pyridine-derived aldoximes and ketoximes. Biochimie 2001, 83(11-12), 995–1002. DOI:10.1016/S0300-9084(01)01345-1

Cibulka R., Hampl F., Kotoučová H., Páv O., Šilhánková A., Liška F.: Quaternary ketoximes – New perspective compounds for hydrolysis of toxic organophosphates.Vojenské zdrav. Listy – Suplementum- 2001, 70(1), 38–40.

Cibulka R.: Hydrolytické katalyzátory založené na komplexech alkyl(pyridin-2-yl)ketoximů. Chem. Listy 2001, 95, 809–810. http://chemicke-listy.cz/docs/full/archiv/2001/12-PDF/809-810.pdf

2000

Cibulka R., Hampl F., Kotoučová H., Mazáč J., Liška F.: Quaternary pyridinium ketoximes – New efficient micellar hydrolytic catalysts. Collect. Czech. Chem. Commun. 2000, 65, 227. DOI:10.1135/cccc20000227

Cibulka R., Liška F., Ludvík J.: Electrochemical reductions of methyl azinyl ketoximes on mercury. Collect. Czech. Chem. Commun. 2000, 65, 1630. DOI:10.1135/cccc20001630

1999

Cibulka R., Hampl F., Šmidrkal J. and Liška F.: Lipophilic N-[2-hydroxyimino-2-(pyridin-2-yl)ethyl]tialkylammonium salts – New ligands for metal ion extractions into organic solvents, Tetrahedron Lett. 1999, 40, 6849. DOI:10.1016/S0040-4039(99)01382-9

Cibulka R., Hampl F., Martinu T., Mazac J., Totevova S., Liska F.: Metal ion chelates of lipophilic alkyl diazinyl ketoximes as hydrolytic catalysts Collect. Czech. Chem. Commun. 1999, 64, 1159. DOI:10.1135/cccc19991159

1998

Cibulka R., Hampl F., Liška F.: Příprava a využití amfifilních oximů odvozených od azinů, Chem. listy 1998, 92(6), 469. http://chemicke-listy.cz/docs/full/1998_06_469-474.pdf

Kotoučová H., Mazáč J., Cibulka R., Hampl F. and Liška F: Unusual course of the p-nitrophenyl phosphate esters cleavage by 3-hydroxyiminoalkylpyridinium salts in micellar solutions, Chem. Lett. 1998 (7), 649. DOI:10.1246/cl.1998.649

1997

Cibulka R., Dvořák D., Hampl F., Liška F.: Metallomicellar hydrolytic catalysts containing ligand surfactants derived from alkyl-2-pyridinylketoxime, Collect. Czech. Chem. Commun. 1997, 62, 1342. DOI:10.1135/cccc19971342

Aktualizováno: 6.9.2017 22:18, Autor: Martina Kovandová


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